PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_46407.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 217aa    MW: 22921.3 Da    PI: 9.929
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_46407.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.1e-124284754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  MLOC_46407.2 42 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 84
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8663584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1738100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-104184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-144190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.49E-144289No hitNo description
Gene3DG3DSA:4.10.280.103.0E-164298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.93E-7159200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDASSLGVSA SLENAAVGAP GGGGGGGNGK GKKKGMPAKN LMAERRRRKK LNDRLYMLRS  60
VVPKISKMDR ASILGDAIDY LKELLQRISD LHSELESAPS SAALGGPSTA NTFLPSTPTL  120
QPFPGRIKEE RCPPAPFPSP SGQQATVEVR MREGQAVNIH MFCARRPGIL LSTMRALDSL  180
GLDIEQAVIS CFDGFAMDVF RAEPAMQGGP WAAAGGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13149KKKGMPAKNLMAERRRRKK
24350ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3551180.0AK355118.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1016C20.
GenBankDQ1515360.0DQ151536.1 Hordeum vulgare subsp. vulgare inducer of CBF expression 2 (ICE2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651003.11e-103PREDICTED: transcription factor ICE1
SwissprotQ9LSE23e-86ICE1_ARATH; Transcription factor ICE1
TrEMBLM0WAF61e-157M0WAF6_HORVD; Uncharacterized protein
STRINGMLOC_46407.11e-145(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12860.15e-81bHLH family protein